Rename project protention -> hexviz

GPT4 says is best
HexViz: In the Discworld series, Hex is a magical computer-like machine
created by the wizards of the Unseen University. HexViz combines the
name Hex with "viz," short for visualization. This name suggests that
the tool has a magical ability to decipher and visualize the
attention patterns within protein structures, much like Hex's
ability to solve complex problems in the Discworld universe.

README.md

@@ -1,4 +1,4 @@
-# Protention
+# hexviz
 Visualize attention pattern on 3D protein structures
 
 ## Install and run
@@ -6,5 +6,5 @@ Visualize attention pattern on 3D protein structures
 ```shell
 poetry install
 
-poetry run streamlit run protention/streamlit/Attention_On_Structure.py
+poetry run streamlit run hexviz/streamlit/Attention_On_Structure.py
 ```

{protention → hexviz}/streamlit/Attention_On_Structure.py

@@ -3,7 +3,7 @@ import stmol
 import streamlit as st
 from stmol import showmol
 
-from protention.attention import Model, ModelType, get_attention_pairs
+from hexviz.attention import Model, ModelType, get_attention_pairs
 
 st.sidebar.title("pLM Attention Visualization")
 

pyproject.toml

@@ -1,7 +1,7 @@
 [tool.poetry]
-name = "protention"
+name = "hexviz"
 version = "0.1.0"
-description = "Visualize and analyze attention patterns for protein language model on structures"
+description = "Visualize and analyze attention patterns for protein language models on structures"
 authors = ["Aksel Lenes <[email protected]>"]
 
 [tool.poetry.dependencies]

tests/test_attention.py

@@ -2,9 +2,9 @@ import torch
 from Bio.PDB.Structure import Structure
 from transformers import T5EncoderModel, T5Tokenizer
 
-from protention.attention import (ModelType, get_attention, get_protT5,
-                                  get_sequences, get_structure,
-                                  unidirectional_sum_filtered)
+from hexviz.attention import (ModelType, get_attention, get_protT5,
+                              get_sequences, get_structure,
+                              unidirectional_sum_filtered)
 
 
 def test_get_structure():